The problem with closing the API is that for even the most advanced users, it will now be impossible to get the (very useful) functionality these extensions provide.
I believe it was tptacek who once commented half-jokingly that the ideal thing to do would be to leave the API open to uBlock Origin exclusively and kill it for everything else. The privileges required by that extension and others like it are indeed very powerful and often abused. This is not a problem with an easy solution, your suggestions are essentially the status quo and the industry is beginning to move on from it.
The issue with that approach is that the next addon developer who comes up with something as useful as uBlock will not be able to develop that. Legacy carveouts protect past innovations but not future ones.
It’s open-source, and the author has a long history of supporting his product for free as an ethical good, even while some of his collaborators have went commercial and cashed out, once even taking the project name.